.. include:: ../README.rst


Additional packages used
========================

Rapidtide would not be possible without many additional open source packages.
These include:

numpy:
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:cite:empty:`numpy`

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   numpy


scipy:
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:cite:empty:`scipy`

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   scipy


matplotlib:
-----------

:cite:empty:`matplotlib`

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   matplotlib


nibabel:
--------

:cite:empty:`nibabel`

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   nibabel


scikit-image:
-------------

:cite:empty:`van2014scikit`

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   van2014scikit


scikit-learn:
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:cite:empty:`scikitlearn`

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   scikitlearn


statsmodels:
-------------

:cite:empty:`seabold2010statsmodels`

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   seabold2010statsmodels


pandas:
-------

:cite:empty:`reback2020pandas`

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   reback2020pandas


nilearn:
--------

:cite:empty:`nilearn`

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   nilearn


pyqtgraph:
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:cite:empty:`pyqtgraph`

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   pyqtgraph


References
==========

Links to PDFs of all papers mentioned here can be found on the OMG
website: https://www.nirs-fmri.net/home/publications

General overview of systemic low frequency oscillations in fMRI data
--------------------------------------------------------------------

:cite:empty:`tong2019low`

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   tong2019low


Multimodal Cerebral Circulation Imaging
---------------------------------------

:cite:empty:`tong2010`
:cite:empty:`tong2011isolating`
:cite:empty:`tong2011improvedCVR`
:cite:empty:`tong2012concurrent`
:cite:empty:`tong2012lfo`
:cite:empty:`tong2014short`
:cite:empty:`tong2014studying`
:cite:empty:`tong2014tracking`
:cite:empty:`donahue2016time`
:cite:empty:`hocke2015optimized`
:cite:empty:`tong2015canapparent`
:cite:empty:`tong2016perfusion`

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   tong2010
   tong2011isolating
   tong2011improvedCVR
   tong2012concurrent
   tong2012lfo
   tong2014short
   tong2014studying
   tong2014tracking
   donahue2016time
   hocke2015optimized
   tong2015canapparent
   tong2016perfusion


Cardiac waveform extraction and refinement
------------------------------------------

:cite:empty:`aslan2019`

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   aslan2019


Physiological noise identification and removal using time delay methods
-----------------------------------------------------------------------

:cite:empty:`frederick2012`
:cite:empty:`tong2011b`
:cite:empty:`tong2013evaluating`
:cite:empty:`hocke2016comparison`
:cite:empty:`erdougan2016correcting`
:cite:empty:`tong2019lowB`
:cite:empty:`korponay2024nathumbeh`

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   frederick2012
   tong2011b
   tong2013evaluating
   hocke2016comparison
   erdougan2016correcting
   tong2019lowB
   korponay2024nathumbeh