calctexticc
Description:
Calculate per-column ICC(3,1) on a set of text files.
Inputs:
One or more two dimensional text files, with quantities in the columns, and subjects in the rows
Outputs:
One dimensional text files with ICC, r, and e for each input quantity
Usage:
Calculate per-column ICC(3,1) on a set of text files.
usage: calctexticc [-h] [--demedian] [--demean] [--nocache] [--debug]
[--deepdebug]
datafile measurementlist outputroot
Positional Arguments
- datafile
A comma separated list of 1 or more 2 dimensional text files. Each column is a distinct quantity. Each line in the file is a measurement on a subject.
- measurementlist
A multicolumn value file of integers specifying how to group measurements. Each row is a subject, each column specifies the line numbers of the repeated measurement. Subject and measurement numbering starts at 0.
- outputroot
The root name for the output text files. Each distinct quantity will be in a separate row corresponding to the input file(s) columns.
Named Arguments
- --demedian
Subtract the median value from each map prior to ICC calculation.
Default: False
- --demean
Subtract the mean value from each map prior to ICC calculation.
Default: False
- --nocache
Disable caching for the ICC calculation. This is a terrible idea. Don’t do this.
Default: False
- --debug
Print out additional debugging information.
Default: False
- --deepdebug
Print out insane additional debugging information.
Default: False