runqualitycheck

Description:

Inputs:

Outputs:

Usage:

Run a quality check on a rapidtide dataset.

usage: runqualitycheck [-h] [--graymaskspec MASK[:VALSPEC]]
                       [--whitemaskspec MASK[:VALSPEC]] [--debug]
                       inputfileroot

Positional Arguments

inputfileroot

The root of the rapidtide dataset name (without the underscore.)

Named Arguments

--graymaskspec

The name of a gray matter mask that matches the input dataset. If VALSPEC is given, only voxels with integral values listed in VALSPEC are used. If using an aparc+aseg file, set to APARC_GRAY.

--whitemaskspec

The name of a white matter mask that matches the input dataset. If VALSPEC is given, only voxels with integral values listed in VALSPEC are used. If using an aparc+aseg file, set to APARC_WHITE.

--debug

Output additional debugging information.

Default: False